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Admin/Tools/RGenetics Tool Dependencies

Rgenetics tool dependencies

Most recent version

is available here

May 2008

Section Tool Dependencies
RG Get Genetic Data
RG Get Genetic Data Library Python
RG Get Genetic Data Upload Python
RG Manage Genetic Data QC Python, Plink, rpy, imagemagick,..
RG Manage Genetic Data Filter Python, Plink
RG Manage Genetic Data Subset Lped Python
RG Manage Genetic Data Merge Lped Python, Plink
RG Manage Genetic Data Convert Python
RG Manage Genetic Data Make snpMatrix file R,BioC,snpMatrix
RG Manage Genetic Data Library Python
RG Manage Genetic Data Upload Python
RG Report, Plot, Model data Case Control Python, Plink
RG Report, Plot, Model data TDT Python, Plink
RG Report, Plot, Model data Fbat Python, Fbat
RG Report, Plot, Model data GLM Python, Plink
RG Report, Plot, Model data Lped Genetic Model Python
RG Report, Plot, Model data LD HaploView,JRE, pdfjam
RG Report, Plot, Model data Ancestry Python, Eigenstrat, rpy, pdfjam