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Community/Deployment/deepTools

deepTools

Deployment

deepTools

Domain
Tools for the visualization, quality control and normalization of data from high-throughput DNA sequencing experiments.
Owners

Bioinformatics and Deep-Sequencing Units at the Max Planck Institute for Immunobiology and Epigenetics.

Audience

Publicly accessible.

User Base
Unknown
Server Topology
Standalone server
Compute
16 processors
Memory
141GB
Storage
Directly attached
Disk Size
2TB
User Management
Account creation is open

deepTools offers multiple methods for highly-customizable data visualization that immensely aid hypothesis generation and data interpretation. It also offers all the tools needed to create coverage files in standard bedGraph and bigWig file formats allowing various normalization procedures and comparisons between two files (for example, treatment and control).

Domain

Community

Compute Infrastructure

See this NAR supplement.

Hardware

processors

16

RAM

141 GB

storage (directly attached)

2 TB

Galaxy Performance Settings

concurrent users

unlimited

CPU cores per job

6

concurrent jobs per user

1

concurrent jobs

2

queueing system

Galaxy built-in

Exemplary run time

BAM file

170 M reads

BED file

10000 regions

bamCoverage

10 minutes

computeMatrix

1 minutes

CategoryDeployment