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Community/Log/2015/InstallingANNOVAR

Galaxy Engineer Blog from Peter Briggs at the University of Manchester

Topic

Installing ANNOVAR in Galaxy

Date
2015/03/18
Who

Peter Briggs

Resolution
A HOWTO for installing ANNOVAR in Galaxy.
Deployment

This is an entry in Peter Briggs' Galactic Engineer Blog.

From 2015/03: Installing ANNOVAR in Galaxy:

  • ANNOVAR (http://www.openbioinformatics.org/annovar/) is a popular tool used to functionally annotate genetic variants detected from various genomes. The Galaxy toolshed includes a tool called table_annovar which can be used to run ANNOVAR. Installation of the tool into a local Galaxy instance is not fully automated and requires some manual steps which are sketched in the tool's README; this post expands on those basic instructions to hopefully make the process easier for others.

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