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Events/ASMS2014

62nd ASMS Conference on Mass Spectrometry and Allied Topics

62nd ASMS Conference on Mass Spectrometry and Allied Topics

Baltimore Maryland, United States

June 15 - 19, 2014

Galaxy will again have a strong presence at the 2014 ASMS meeting. This year it's in Baltimore, two weeks before GCC2014.

Day

Time

Location

Presentation

Links

Monday

9:10am - 9:30am

Ballroom III

Novel Galaxy Workflows Combining RNA-seq and Proteomic MS/MS Reveal New Insights into Non-Model Organisms

Conrad Bessant, Queen Mary University of London

10:30am - 1:00pm

Exhibit Hall C-G

MP 033: Community-based Development and Evaluation of Biological Mass Spectrometry Software via the Galaxy Tool Shed

Bart Gottschalk, Minnesota Supercomputing Institute

Poster

MP 049: Characterizing molecular mechanisms of mammalian hibernation via non-model organism quantitative proteogenomics

Katie Vermillion, University of Minnesota-Duluth, Duluth, MN

MP 429: Large-Scale Quantitative Proteomic/Metaproteomic Platform Discovers Target Pathways and Promising Biomarkers of COPD-associated Lung Cancer

Brian Sandri, University of Minnesota, Minneapolis, MN

4:10pm - 4:30pm

Ballroom III

Public sharing of complex MS-based qualitative and quantitative proteomic data analysis workflows: adding value to big data repositories

Tim Griffin, University of Minnesota

Slides

Tuesday

10:30am - 1:00pm

Exhibit Hall C-G

TP 077: Identifying Novel Peptide Sequence Variants from High Throughput RNA-Seq Data Via Flexible Proteomic Database Generation using the Galaxy Framework

James Johnson, Minnesota Supercomputing Institute

12:00-pm - 2:30pm

TP 078: Towards a Novel Unprecedentedly Comprehensive Protein Identification Strategy, Mass Spectrometry and Ribosome Profiling: The Perfect Match

Gerben Menschaert, Ghent University, Ghent, Belgium

Wednesday

5:45pm - 7:00pm

Room 339-340

Workshop 7: The Galaxy Framework for Biological MS Informatics: Practical Tips for Software Developers and Users

Tim Griffin (presiding), University of Minnesota, Minneapolis, MN
See below for more information

Thursday

12:00pm - 2:30pm

Exhibit Hall C-G

ThP 044: Flexible, Accessible and Reproducible Workflows for Tandem Proteogenomic and Metaproteomic Analysis using the Galaxy-P Platform

Pratik Jagtap, Center for Mass Spectrometry, St. Paul, MN

Poster

Workshop 7: The Galaxy Framework for Biological MS Informatics: Practical Tips for Software Developers and Users

Wednesday, 5:45-7:00 PM, Room 339-340.
Tim Griffin (presiding), University of Minnesota

The open source Galaxy software framework is gaining momentum as a tool to solve biological MS informatics problems. It offers unique features such as flexibility to integrate disparate software programs into effective workflows, and the ability to share complete workflows with other researchers. In this workshop, expert developers and users of Galaxy for biological MS data analysis will present practical tutorials. Presentations will be aimed at informing both software developers and biologists/analytical chemists on how they can make effective use of the Galaxy framework in their research.

Scheduled speakers:

Talk

Topic

Speaker

Links

1.

Short introduction to the workshop

Tim Griffin, University of Minnesota, Minneapolis, MN

2.

Using the Galaxy Tool Shed to publish software for MS-based data analysis

Ira Cooke, La Trobe University, Australia

3.

Using installed tools and workflows within GalaxyP

Pratik Jagtap, Center for Mass Spectrometry and Proteomics, St. Paul, MN

4.

Using Galaxy to generate customized databases for MS-based proteogenomics

Gloria Sheynkman, University of Wisconsin, Madison, WI

5.

Using Galaxy for advanced multi-omic applications

Jorrit Boekel , Karolinska Institute/Science for Life Laboratory, Sweden

6.

Concluding questions/discussion