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||<|4 class="th"> June 6 ||<)> 8:50 || Hemisfair 3 || Embracing Complexity and Diversity: Discovery Metaproteomics of Multiple Microbiomes using the Galaxy Framework || [[http://cbs.umn.edu/contacts/pratik-d-jagtap|Pratik Jagtap]] ||
||<)> 10:30 || Poster Session, Odd Numbered || Poster MP 265: A Multi-omics Visualization Platform (MVP) Plug-in for Galaxy-based Applications || Thomas !McGowan ||
||<|2 )> 12:30 ||<|2> Poster Session, Even Numbered || Poster MP 266 From Start to Finish: a complete proteogenomic informatics environment implemented in the Galaxy || Getiria Onsongo ||
|| Poster MP 436 Complementary ERLIC and RPLC online separations significantly expand sequence coverage in MS-based proteomic and proteogenomic studies || Candace Guerrero ||
||<-5 class="th"> ||
||<|2 class="th"> June 7 ||<)> 10:30 || Poster Session, Odd Numbered || Poster TP 775: Quantitative Top Down Proteomics in Translational Research: Markers for Rejection in Peripheral Blood Following Kidney Transplantation || Philip Compton ||
||<)> 12:30 || Poster Session, Even Numbered || Poster TP 388: Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy to Reveal Human Proteomic Variation || Anthony Cesnik ||
||<-5 class="th"> ||
||<|4 class="th"> June 8 ||<|3 )> 12:30 ||<|3> Poster Session, Even Numbered || Poster WP 390 [[https://usegalaxyp.org/|Galaxy-P]]: recent developments and emerging applications || Timothy Griffin || [[http://cbs.umn.edu/sites/cbs.umn.edu/files/public/downloads/ASMS_Griffin_poster_FINAL.pdf|Poster]] ||
|| Poster WP 392: APOSTL: An interactive Galaxy Pipeline For Reproducible Analysis of Affinity Proteomics Data || Brent Kuenzi ||
|| Poster WP 396: High Performance Computing at the National Resource for Translational and Developmental Proteomics || Ryan Fellers ||
||<)> 5:45 || Room 305 || '''[[#Workshop 14: Galaxy for Proteomics Data Analysis: An Interactive Demonstration|Workshop 14: Galaxy for Proteomics Data Analysis: An Interactive Demonstration]]''' || Timothy Griffin || [[http://cbs.umn.edu/sites/cbs.umn.edu/files/public/downloads/Documentation%20for%20ASMS%202016%20Gakaxy-P%20Workshop.pdf|Tutorial]] ||
||<|4 class="th"> June 6 ||<)> 8:50 || Hemisfair 3 || Embracing Complexity and Diversity: Discovery Metaproteomics of Multiple Microbiomes using the Galaxy Framework || [[http://cbs.umn.edu/contacts/pratik-d-jagtap|Pratik Jagtap]] || [[http://cbs.umn.edu/sites/cbs.umn.edu/files/public/downloads/Embracing%20Complexity%20and%20Diversity%20ASMS%202016.pdf|Slides]] ||
||<)> 10:30 || Poster Session, Odd Numbered || Poster MP 265: A Multi-omics Visualization Platform (MVP) Plug-in for Galaxy-based Applications || Thomas !McGowan || [[http://cbs.umn.edu/sites/cbs.umn.edu/files/public/downloads/ASMS_Poster_McGowan.pdf|Poster]] ||
||<|2 )> 12:30 ||<|2> Poster Session, Even Numbered || Poster MP 266 From Start to Finish: a complete proteogenomic informatics environment implemented in the Galaxy || Getiria Onsongo || [[http://cbs.umn.edu/sites/cbs.umn.edu/files/public/downloads/ASMS16_onsongo.pdf|Poster]] ||
|| Poster MP 436 Complementary ERLIC and RPLC online separations significantly expand sequence coverage in MS-based proteomic and proteogenomic studies || Candace Guerrero || [[http://cbs.umn.edu/sites/cbs.umn.edu/files/public/downloads/Guerrero%20ASMS%20Poster%20Template%202016%20PDF.pdf|Poster]] ||
||<-6 class="th"> ||
||<|2 class="th"> June 7 ||<)> 10:30 || Poster Session, Odd Numbered || Poster TP 775: Quantitative Top Down Proteomics in Translational Research: Markers for Rejection in Peripheral Blood Following Kidney Transplantation || Philip Compton || ||
||<)> 12:30 || Poster Session, Even Numbered || Poster TP 388: Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy to Reveal Human Proteomic Variation || Anthony Cesnik || ||
||<-6 class="th"> ||
||<|4 class="th"> June 8 ||<|3 )> 12:30 ||<|3> Poster Session, Even Numbered || Poster WP 390 [[https://usegalaxyp.org/|Galaxy-P]]: recent developments and emerging applications || [[http://cbs.umn.edu/contacts/timothy-j-griffin|Timothy Griffin]] || [[http://cbs.umn.edu/sites/cbs.umn.edu/files/public/downloads/ASMS_Griffin_poster_FINAL.pdf|Poster]] ||
|| Poster WP 392: APOSTL: An interactive Galaxy Pipeline For Reproducible Analysis of Affinity Proteomics Data || Brent Kuenzi || ||
|| Poster WP 396: High Performance Computing at the National Resource for Translational and Developmental Proteomics || Ryan Fellers || ||
||<)> 5:45 || Room 305 || '''[[#Workshop 14: Galaxy for Proteomics Data Analysis: An Interactive Demonstration|Workshop 14: Galaxy for Proteomics Data Analysis: An Interactive Demonstration]]''' || [[http://cbs.umn.edu/contacts/timothy-j-griffin|Timothy Griffin]] || [[http://cbs.umn.edu/sites/cbs.umn.edu/files/public/downloads/Documentation%20for%20ASMS%202016%20Gakaxy-P%20Workshop.pdf|Tutorial]] ||
Line 24: Line 24:
Organinzer: Tim Griffin, University of Minnesota''' Organizer: [[http://cbs.umn.edu/contacts/timothy-j-griffin|Tim Griffin]], University of Minnesota'''

64th ASMS Conference on Mass Spectrometry and Allied Topics

64th ASMS Conference on Mass Spectrometry and Allied Topics

San Antonio, Texas, United States

June 5-9, 2016

Galaxy will have a strong presence at the 2016 ASMS meeting.

Day

Time

Location

Presentation

Speaker

Links

June 6

8:50

Hemisfair 3

Embracing Complexity and Diversity: Discovery Metaproteomics of Multiple Microbiomes using the Galaxy Framework

Pratik Jagtap

Slides

10:30

Poster Session, Odd Numbered

Poster MP 265: A Multi-omics Visualization Platform (MVP) Plug-in for Galaxy-based Applications

Thomas McGowan

Poster

12:30

Poster Session, Even Numbered

Poster MP 266 From Start to Finish: a complete proteogenomic informatics environment implemented in the Galaxy

Getiria Onsongo

Poster

Poster MP 436 Complementary ERLIC and RPLC online separations significantly expand sequence coverage in MS-based proteomic and proteogenomic studies

Candace Guerrero

Poster

June 7

10:30

Poster Session, Odd Numbered

Poster TP 775: Quantitative Top Down Proteomics in Translational Research: Markers for Rejection in Peripheral Blood Following Kidney Transplantation

Philip Compton

12:30

Poster Session, Even Numbered

Poster TP 388: Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy to Reveal Human Proteomic Variation

Anthony Cesnik

June 8

12:30

Poster Session, Even Numbered

Poster WP 390 Galaxy-P: recent developments and emerging applications

Timothy Griffin

Poster

Poster WP 392: APOSTL: An interactive Galaxy Pipeline For Reproducible Analysis of Affinity Proteomics Data

Brent Kuenzi

Poster WP 396: High Performance Computing at the National Resource for Translational and Developmental Proteomics

Ryan Fellers

5:45

Room 305

Workshop 14: Galaxy for Proteomics Data Analysis: An Interactive Demonstration

Timothy Griffin

Tutorial

Workshop 14: Galaxy for Proteomics Data Analysis: An Interactive Demonstration

Wednesday, 5:45-7:00 PM, Room 305
Organizer: Tim Griffin, University of Minnesota

The Galaxy framework has emerged as a useful and powerful tool for MS-based proteomics data analysis and also multi-omic application (for example see recent publications such as Nat Biotechnol. 2015, 33:137-9; Mol Cell Proteomics. 2015, 14:3087-93; Mol Cell Proteomics. 2012, 11:M111.015974). The Galaxy operating environment offers an informatics workbench where disparate software can be deployed and integrated into complex workflows. Galaxy also offers the ability to share complete workflows and data with other users, promoting reproducibility and dissemination of even complex data analysis schemes.

This workshop will provide attendees the opportunity to take Galaxy for a 'test drive' in analyzing MS-based protoemics data. Attendees will have the opportunity to access a Galaxy instance and walk through the basic steps of setting up an analysis of representative MS data from a proteomics experiment. The hands-on tutorial will include steps such as pre-processing of mass spectral data, sequence database searching, and filtering and visualizing outputs.

Attendees will also be introduced to basic operations and concepts of the Galaxy operating environment, such as the creation of histories and workflows, and functionalities for sharing tools and workflows with others. An overview of the current state of software available in Galaxy for proteomics and multi-omics applications will also be provided.

The workshop will be led by both developers and users well-versed in the use of Galaxy for multi-omics data analysis.

Attendees are encouraged to bring a laptop computer to participate.