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64th ASMS Conference on Mass Spectrometry and Allied Topics

64th ASMS Conference on Mass Spectrometry and Allied Topics

San Antonio, Texas, United States

June 5-9, 2016

Galaxy will again have a strong presence at the 2016 ASMS meeting.






June 6


Hemisfair 3

Embracing Complexity and Diversity: Discovery Metaproteomics of Multiple Microbiomes using the Galaxy Framework

Pratik Jagtap


Poster Session, Odd Numbered

Poster MP 265: A Multi-omics Visualization Platform (MVP) Plug-in for Galaxy-based Applications

Thomas McGowan


Poster Session, Even Numbered

Poster MP 266 From Start to Finish: a complete proteogenomic informatics environment implemented in the Galaxy

Getiria Onsongo

Poster MP 436 Complementary ERLIC and RPLC online separations significantly expand sequence coverage in MS-based proteomic and proteogenomic studies

Candace Guerrero

June 8


Poster Session, Even Numbered

Poster WP 390 Galaxy-P: recent developments and emerging applications

Timothy Griffin


Room 305

Workshop 14: Galaxy for Proteomics Data Analysis: An Interactive Demonstration

Timothy Griffin

Workshop 14: Galaxy for Proteomics Data Analysis: An Interactive Demonstration

Wednesday, 5:45-7:00 PM, Room 305
Organinzer: Tim Griffin, University of Minnesota

The Galaxy framework has emerged as a useful and powerful tool for MS-based proteomics data analysis and also multi-omic application (for example see recent publications such as Nat Biotechnol. 2015, 33:137-9; Mol Cell Proteomics. 2015, 14:3087-93; Mol Cell Proteomics. 2012, 11:M111.015974). The Galaxy operating environment offers an informatics workbench where disparate software can be deployed and integrated into complex workflows. Galaxy also offers the ability to share complete workflows and data with other users, promoting reproducibility and dissemination of even complex data analysis schemes.

This workshop will provide attendees the opportunity to take Galaxy for a 'test drive' in analyzing MS-based protoemics data. Attendees will have the opportunity to access a Galaxy instance and walk through the basic steps of setting up an analysis of representative MS data from a proteomics experiment. The hands-on tutorial will include steps such as pre-processing of mass spectral data, sequence database searching, and filtering and visualizing outputs.

Attendees will also be introduced to basic operations and concepts of the Galaxy operating environment, such as the creation of histories and workflows, and functionalities for sharing tools and workflows with others. An overview of the current state of software available in Galaxy for proteomics and multi-omics applications will also be provided.

The workshop will be led by both developers and users well-versed in the use of Galaxy for multi-omics data analysis.

Attendees are encouraged to bring a laptop computer to participate.