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Events/PSUMedicine2015

Penn State University College of Medicine

Introduction to Galaxy for Next Generation Sequencing Analysis

May 27, 2015, 10:00-4:00
Instructor: Anton Nekrutenko, Penn State University

Room 302C, Conference Center
Penn State Hershey
Hershey, Pennsylvania, United States


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Registration

Registration is free. Affiliation with Penn State is not required, unless the workshop is oversubscribed, in which case preference will be given to registrants from Penn State. Capacity is limited so you are encouraged to register now.

Audience

Are you a biomedical researcher who needs to do complex analysis on large datasets?

Galaxy is an open, web-based platform for data intensive life science research that enables non-bioinformaticians to create, run, tune, and share their own bioinformatic analyses.

This hands-on workshop will teach participants how to integrate data, and perform simple and complex analysis within Galaxy in domains such as variation, RNA-Seq / differential expression, and metagenomics. It will also cover data visualization and visual analytics, and how to share and reuse your bioinformatic analyses, all from within Galaxy.

No programming or Linux command line experience is required.

Agenda

Time

Topic

10:00

Introduction to Galaxy and simple next-generation sequencing analysis

12:00

Lunch (catered)

1:00

Advanced next generation sequencing analysis

4:00

Done

Coffee and tea will also be available in the morning and in the afternoon.

Logistics

The workshop is being held at the University Fitness and Conference Center on the Penn State Hershey campus.

This is a very much a hands-on workshop. To fully participate, attendees need to bring a wi-fi enabled laptop with either the Firefox or Google Chrome web browser installed.



Amazon Web Services

Support

This workshop is generously supported by the Department of Biochemistry and Molecular Biology, the Institute for Personalized Medicine, the Penn State College of Medicine, an AWS in Education grant award, and the National Institutes of Health (NIH).

Slides

Feedback

Questions?

Contact Jill Curry <jcurry@hmc.psu.edu> at Penn State or Galaxy Outreach <outreach@galaxyproject.org>.