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Events/SLU2013

Saint Louis University Department of Biochemistry and Molecular Biology

Introduction to Galaxy
Tuesday April 30, 2013

Instructor: Dave Clements, Galaxy Project, Emory University 

9:00am-5:00pm
Caroline Building, Room 204

Registration

Registration is free, and open to anyone, but advanced registration is required.  

Audience

Are you a biomedical researcher who needs to do complex analysis on large datasets?

Galaxy is an open, web-based platform for data intensive biomedical research that enables non-bioinformaticians to create, run, tune, and share their own bioinfor-matic analyses.

These hands-on workshops will teach participants how to integrate data, and perform simple and complex analysis within Galaxy. They will also cover data visualization and visual analytics, and how to share and reuse your bioinformatic analyses, all from within Galaxy.

No programming or Linux command line experience is required.

Agenda

Time

Topic

9:00

Welcome

Introductions and logistics

9:20

Basic Analysis with Galaxy

Walk through a worked, hands-on example demonstrating basic analysis with Galaxy

10:30

Basic Analysis into Reusable Workflows

Genericize our analysis into something we can use again.

11:00

RNA-Seq Example Part I

Review NGS data quality issues and some quality control options in Galaxy

11:30

Lunch (on your own)

1:00

RNA-Seq Example Part II

Mapping and Splice Junction Calling with Tophat

1:30

Galaxy Project Overview

Introduction to Galaxy and the Galaxy community

2:00

RNA-Seq Example Part III

Cufflinks, Visualization, and Visual Analytics

2:30

Sharing, Publishing, and Reproducibility with Galaxy

Share and publish analysis, datasets, and workflows with Galaxy

2:50

Break

3:10

ChIP-Seq Example

A second NGS example, this time with ChIP-Seq data

5:00

Done

Support

Amazon Web Services
2013 Missouri Galaxy Workshop Tour

This workshop is generously supported by an AWS in Education grant award, and Saint Louis University Department of Biochemistry and Molecular Biology.  

This workshop is part of the 2013 Missouri Galaxy Workshop Tour.

Flyer

attachment:SLUGalaxy2013.pdf
Please distribute to groups in Saint Louis University that might be interested. You are also encouraged to print a post a copy of the workshop flyer.

Questions?

Contact Maureen Donlin <donlinmj AT slu DOT edu> or Galaxy Outreach <outreach AT galaxyproject DOT org>.