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Events/Switzerland2012

Swiss Galaxy Workshop, Wednesday, October 3rd, Bern

Swiss Galaxy Workshop, Wednesday, October 3rd, Bern

Audience

This workshop is aimed at Galaxy administrators and users alike. We also welcome participants who are using workflow management systems other than Galaxy and tool developers who are looking for such systems to offer their tools to a wider audience.

We would like to discuss the status of the Galaxy project, new developments, interface to other systems, extensions and best practice in reproducible research.

The workshop is part of the SyBIT Tech Day series.

Schedule

Time

Speaker

Title

Slides

9:15 - 9:30

ARRIVAL

9:30 - 9:40

Peter Kunszt (SyBIT)

Welcome and usual news

9:40 - 9:50

Hans-Rudolf Hotz (FMI)

Galaxy Introduction

pdf

9:50 - 10:30

Dannon Baker (Galaxy Project)

Status of the Galaxy Project

pdf

10:30 - 11:00

BREAK

11:00 - 11:15

Mark Robinson (IMLS, University of Zurich)

edgeR and Galaxy

pdf

11:15 - 11:30

Tim Roloff (FMI)

Microarray analaysis

pdf

11:30 - 11:45

Hans-Rudolf Hotz (FMI)

NGS analysis

pdf

11:45 - 12:00

Manuel Kohler (D-BSSE, ETH Zurich)

openBIS and Galaxy

pdf

12:00 - 13:45

LUNCH Break (lunch will be at 12:15)

13:45 - 14:00

Nikolai Vazov (USIT, University of Oslo)

Installing Galaxy on a cluster : issues around DB server, queuing system, external authentication, etc.

odp

14:00 - 14:30

Jelle Scholtalbers (TRON gGmbh, University of Mainz)

NGS sample tracking and processing

pdf

14:30 - 14:45

Mario Emmenlauer (Biozentrum, University of Basel)

High Content Screening (Bee)

pdf

14:45 - 15:15

BREAK

15:15 - 15:30

Grainne Kerr (DKFZ, Heidelberg)

Galaxy and a high throughput screening lab

pdf

15:30 - 15:45

Björn Grüning (University of Freiburg)

Chemical Tool Box

html5

15:45 - 16:00

Sveinung Gundersen (The Norwegian Radium Hospital)

Genomic HyperBrowser

pdf

16:00 - 16:01

Hans-Rudolf Hotz (FMI)

concluding remarks

16:01 - 16:15

DEPARTURE (....and going to the pub)

Location

Bern Hochschulstr. 4

Bern Hochschulstr. 4
Hauptgebaeude
Room 331

Accessibility by public transport: it is a 5 minutes walk from the main train station. Take exit "Grosse Schnaze/Universitaet" (the one with the elevator). Walking out of the elevator, you will be standing in front of the Hauptgebaeude. Take the entrance of the left side.


SyBIT SystemsX.ch

Support

This workshop is generously supported by SyBIT / SystemsX.ch

Registration

The workshop is full, and registration is closed. Please contact Hans-Rudolf Hotz in order to get informed in case places become available again.

Questions?

Contact Hans-Rudolf Hotz