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Events/Switzerland2014

2nd Swiss Galaxy Workshop, Wednesday, October 1st, Bern

After the big success of the first Swiss Galaxy Workshop two years ago, we are going to organize a similar event again in fall 2014.

Audience

This workshop is aimed at Galaxy administrators and users alike. We also welcome participants who are using workflow management systems other than Galaxy and tool developers who are looking for such systems to offer their tools to a wider audience.

We would like to discuss the status of the Galaxy project, new developments, interface to other systems, extensions and best practice in reproducible research.

The workshop is part of the SyBIT Tech Day series.

Extra Training Day and Developers Day

Prior to the workshop, we run a Galaxy training/demo Day on Tuesday September, 30th in Bern

Following the workshop, we organise a Developers Day on Thursday, October 2nd in Freiburg (Germany).

Registration

Registration is now closed. Please contact Hans-Rudolf Hotz or Björn Grüning if you want your name to be put on the waiting list. There is a good chance, we can still accommodate you.

Preliminary Schedule

Time

Speaker

Title

Slides

9:15 - 9:30

ARRIVAL

9:30 - 9:45

Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg)

welcome

pdf

9:45 - 10:30

Dannon Baker (Galaxy Project)

Status of the Galaxy Project

pdf

10:30 - 10:50

coffee Break

10:50 - 11:40

Björn Grüning (University of Freiburg)

Galaxy: putting pieces together

whiteboard

11:40 - 12:00

Nikolay Vazov (USIT, University of Oslo)

Authentication in Galaxy : let's use what is out there - National Identity Providers

pdf

12:00 - 13:30

Lunch Break (lunch will be at 12:15)

13:30 - 13:40

Jeevan Karloss (CIGENE, Norwegian University of Life Sciences)

Elixir Norway and Galaxy

pdf

13:40 - 14:00

Marco Antonio Mendoza (IGBMC Strasbourg)

NGS-QC Generator: A quality control system for ChIP-seq and enrichment-related NGS datasets

pdf

14:00 - 14:30

Sarah Diehl (MPI-IE Freiburg)

deepTools: a flexible platform for exploring deep-sequencing data

pdf

14:30 - 15:00

coffee Break

15:00 - 15:30

Hans-Rudolf Hotz (FMI)

Using Galaxy for NGS analysis in a collaborative environment

pdf

15:30 - 15:45

Tim-Christoph Roloff (FMI)

Genomics analysis at FMI

pdf

15:45 - 16:00

Torsten Houwaart (University of Freiburg)

RNA structure visualized in Galaxy

pdf

16:00 - 16:01

Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg)

concluding remarks

16:01 - 16:15

DEPARTURE (....and going to the pub)

Location

The workshop will be in the UniS-Building (room: A -119) of the Universität Bern, which is a 5 minutes walk away from the main train station.


SyBIT SystemsX.ch

Support

This workshop is generously supported by SyBIT / SystemsX.ch

Questions?

Contact Hans-Rudolf Hotz or Björn Grüning