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Events/Switzerland2014/trainingday

Galaxy Demo / Training Day, Tuesday, September 30th, Bern

Content

The Demo/Training day will focus on empowering biologists to deploy and maintain their own Galaxy servers. Almost everything covered will be done from a web browser, without using a shell (command line) interface, or scripting. The workshop is also appropriate for bioinformaticians.

Topics covered:

  • Introduction to Galaxy
  • Galaxy datatypes, histories, datasets, tools
  • Installing and administering your own Galaxy on the cloud
  • Simple text manipulations, a simple workflow
  • Using the ToolShed

  • NGS-analaysis: RNA-seq and/or Chip-Seq
  • Visualizations

Preliminary Schedule

Time

Speaker

Title

Type

Slides

9:15 - 9:30

ARRIVAL

9:30 - 9:40

Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg)

welcome

pdf

9:40 - 9:50

Hans-Rudolf Hotz (FMI)

Galaxy Introduction

demo

pdf

9:50 - 10:30

Hans-Rudolf Hotz (FMI)

datatypes, histories, datasets, tools, data sharing

hands-on

10:30 - 11:00

coffee Break

11:00 - 12:00

Hans-Rudolf Hotz (FMI)

simple text manipulations, workflows

hands-on

12:00 - 13:30

Lunch Break (lunch will be at 12:15)

13:30 - 14:10

Dannon Baker (Galaxy Project)

installing and administering your own Galaxy on the cloud

hands-on

14:10 - 14:40

Björn Grüning (University of Freiburg)

toolshed

hands-on

14:40 - 15:00

coffee Break

15:00 - 15:30

Björn Grüning (University of Freiburg)

NGS-analaysis: a Chip-Seq example

hands-on

15:30 - 16:00

Dannon Baker (Galaxy Project)

visualizations

hands-on

16:00 - 16:01

Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg)

concluding remarks

16:01 - 16:15

DEPARTURE (....and going to the pub)

This schedule will most likely change. It will be adapted according to the progress we make during the day

Location

The training day will be held in the UniS-Building (room: A -119) of the Universität Bern, which is a 5 minutes walk away from the main train station.

Registration

Registration is now closed. Please contact Hans-Rudolf Hotz or Björn Grüning if you want your name to be put on the waiting list. There is a good chance, we can still accommodate you.


SyBIT SystemsX.ch

Support

This workshop is generously supported by SyBIT / SystemsX.ch