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Galaxy Custom Visualizations

There are many custom visualizations available for Galaxy which are not part of the Galaxy core package. Here, we provide an overview for such visualizations.

Resource Domain Owners Formats Description Date Created/Updated
DeepTools NGS, QC, Normalization, Visualization Max-Planck-Institut für Immunbiologie und Epigenetik BAM, bigWig, BED User-friendly tools for the normalization and visualization of deep-sequencing data 2014/07
MetaPhlAn NGS, Visualization Harvard School of Public Health Sequence file (.fasta, .fastq, .tar.bz2 etc.) A computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data. 2014/07
VideoViz Imaging, Microscopy, other Video Data Center for Phage Technology Mp4 This visualization provides support for video playback inside galaxy. It is part of a push to add more tools, formats, and converters to support imaging data. 2014/07
LEfSe NGS, Visualization Harvard School of Public Health Microbial abundance tables with two meta rows Determines the features (organisms, clades etc.) most likely to explain differences between classes by coupling standard tests for statistical significance. 2014/07