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Visualization in Galaxy

Genome Browser (aka Trackster)

Trackster, gene-level view

Trackster is Galaxy's built-in genome browser and is similar to IGV, IGB, and Ensembl's & UCSC's genome browsers. Trackster highlights includes:

  • visualize SAM/BAM, BedGraph, Wiggle/BigWig, BED/BigBED, GFF/GFF3/GTF, and VCF datasets;

  • will work with very large datasets;
  • no data or software downloads;
  • save, share, and publish your visualizations.

More information about using Trackster can be found here: Trackster

Circos plot (aka Circster)

Tool Parameter Sweeps (aka Sweepster)

ScatterPlot

Phylogenetic Tree Visualization