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News/2012_12_03_DistributionNewsBrief

Complete News Brief

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Highlights:
  • NGS: Mapping tools Bowtie and Lastz have moved from the Galaxy distribution to the Galaxy Main Tool Shed.

  • Improvements in the display of http://wiki.galaxyproject.org/Tool Shed repository dependencies and contents.

  • More Tool Shed updates including details of the Functional test framework, a new hgweb.config file and HgWebConfigManager tool, plus other management features.

  • Updated UI display and functionality for datasets and histories: new paused state and "resume/paused" toggle, new History menu options (seen at right →), and improved Scatterplot visualizations.

  • The SGE job runner has now been fully deprecated and replaced with DRMAA.

  • Several enhancements to aid with reproducibility: "Re-run" and "Extract workflow" validates datasets and tools, respectively, and a new data tables registry within the Administration menu, along with associated tools, corrects or warns about tool migration issues.

  • Highlights from the new Galaxy CloudMan release and December 2012 Galaxy Update.

http://getgalaxy.org

http://bitbucket.org/galaxy/galaxy-dist

http://galaxy-dist.readthedocs.org

new:     $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
upgrade: $ hg pull -u -r f364d992270c

Thanks for using Galaxy!

The Galaxy Team

Posted to the Galaxy News on 2012-12-03

CategoryNews