Galaxy
PublicGalaxyServers

80+ Public Galaxy Servers

Contents

  1. General Purpose / Genomics Servers
    1. Andromeda
    2. Biomina
    3. CBiB Galaxy
    4. DBCLS Galaxy
    5. Erasmus MC
    6. GalaxEast
    7. Galaxy@PRABI
    8. Galaxy Main
    9. Galaxy Test
    10. GigaGalaxy
    11. GVL QLD
    12. GVL Tutorial
    13. Insitut Curie
    14. NELLY
    15. Pitagora-Galaxy
  2. Domain Servers
    1. Alveo: Human Communication Science Virtual Laboratory
    2. ballaxy
    3. CAPER
    4. Center for Phage Technology (CPT)
    5. Cistrome Analysis Pipeline
    6. CoSSci
    7. Dintor
    8. Galaxy-CEFAP
    9. Galaxy Integrated Omics (GIO)
    10. Galaxy-P
    11. Galaxy PGTB (Virtual Biodiversity Lab)
    12. Genomic Hyperbrowser
    13. Gene Ontololgy (GO)
    14. Image Analysis and Processing Toolkit
    15. ImmPort Galaxy
    16. International Rice Research Institute (IRRI) Galaxy
    17. LAPPS Grid
    18. MISSISSIPPI
    19. Nebula
    20. Oqtans
    21. Orione
    22. OSDDlinux LiveGalaxy
    23. OSDD Molecular Property Diagnostic Suite (MPDS)
    24. PhenoMeNal
    25. PopGenIE / PlantGenIE
    26. RepeatExplorer
    27. RiboGalaxy
    28. RNA-Rocket @ Pathogen Portal
    29. RNA-Seq Portal
    30. Stem Cell Discovery Engine
    31. South Green
    32. VectorBase Galaxy
    33. VirAmp
    34. Whale Shark
    35. Workflow4Metabolomics
  3. Tool Publishing Servers
    1. ABiMS Tools
    2. AB-OpenLab
    3. AGEseq @ AspenDB
    4. APOSTL
    5. ARGs-OAP
    6. BioCiphers Lab Galaxy
    7. BioMaS
    8. BISTRO
    9. BitLAB
    10. Chemical Annotation Retrieval Toolkit (CART)
    11. CTMM-TraIT Demo Galaxy
    12. deepTools2
    13. EpiToolKit
    14. Halogen Bonding
    15. Huttenhower Lab
    16. IBERS @ Aberystwyth
    17. In Silico Galaxy
    18. Koslicki Lab
    19. kmer-SVM
    20. LiSIs
    21. Majewski Lab
    22. Martin Luther U. Halle-Wittenberg
    23. MBAC Metabiome Portal
    24. MGEScan
    25. MiModD NacreousMap
    26. MPI-HLR Bioinformatics Server
    27. NGS-QC
    28. ODoSE
    29. Osiris
    30. Palfinder
    31. PIA
    32. PredPharmTox
    33. PreSTIGE
    34. QBRC Galaxy and PIPE-CLIP
    35. RDF2Graph
    36. SIFTED
    37. SymD
    38. VarCap
    39. Vinther Lab
    40. Wageningen UR
    41. ZBIT Bioinformatics Toolbox
  4. Public ToolSheds
    1. Galaxy Main Tool Shed
    2. Galaxy Test ToolShed
    3. Galaxy@PRABI Tool Shed
    4. DTL ToolShed
    5. GUGGO ToolShed

Publicly Accessible Galaxy Servers

The Galaxy Project's public server (UseGalaxy.org, Main) can meet many needs, but it is not suitable for everything (see Choices for why) and cannot possibly scale to meet the entire world's needs.

Fortunately the Galaxy Community is helping out by installing Galaxy at their institutions and then making those installations either publicly available or open to their organizations or community. This page lists publicly accessible Galaxy servers. To be included here a server must be accessible to any academic researcher anywhere in the world. Servers can require logins and enforce quotas.

To add your public Galaxy server to this list, please either just add it (hey, it's a wiki), or describe the server here and we'll post it this directory.

Semi-Public Galaxy Services

There are also a number of semi-public Galaxy services that make Galaxy available to large research communities, usually on a geographical basis. See the semi-public Galaxy services list.

General Purpose / Genomics Servers

These servers implement a broad range of tools and and aren't specific to any part of the tree of life, or to any specific type of analysis. These are servers you can use when want to do general genomic analysis.

Andromeda

Andromeda

Biomina

Biomina Galaxy

CBiB Galaxy

CBiB Galaxy

DBCLS Galaxy

DBCLS Galaxy

Erasmus MC

Erasmus MC Bioinformatics Galaxy Server

GalaxEast

GalaxEast

Galaxy@PRABI

Galaxy@PRABI

Galaxy Main

usegalaxy.org (Main)

Galaxy Test

GigaGalaxy

GigaGalaxy

GVL QLD

Genomics Virtual Lab

GVL Tutorial

Genomics Virtual Lab

Insitut Curie

Institut Curie

NELLY

University of Costa Rica

Pitagora-Galaxy

Pitagora-Galaxy

Domain Servers

Domain servers specialize in either a particular branch of the tree of life or in particular types of analysis. However, within their specializations, domain servers offer a wide variety of tools.

Alveo: Human Communication Science Virtual Laboratory

Alveo

ballaxy

ballaxy

CAPER

CAPER

Center for Phage Technology (CPT)

Center for Phage Technology (CPT)

Cistrome Analysis Pipeline

Cistrome Analysis Pipeline

CoSSci

CoSSci; Women's work map: cycles of lines contain local autocorrelation regions

Dintor

Dintor: Data Integrator Tool Suite

Galaxy-CEFAP

Galaxy-CEFAP

Galaxy Integrated Omics (GIO)

Galaxy Integrated Omics (GIO)

Galaxy-P

Galaxy-P

Galaxy PGTB (Virtual Biodiversity Lab)

PGTB Galaxy

Genomic Hyperbrowser

Genomic Hyperbrowser

Gene Ontololgy (GO)

GO Galaxy

Image Analysis and Processing Toolkit

Image Analysis and Processing ToolKit

ImmPort Galaxy

ImmPort Galaxy

International Rice Research Institute (IRRI) Galaxy

IRRI Galaxy

LAPPS Grid

LAPPS Grid Galaxy Workflow Engine

MISSISSIPPI

MISSIPPI

Nebula

Nebula

Oqtans

Oqtans

Orione

Orione

OSDDlinux LiveGalaxy

OSDDlinux LiveGalaxy

OSDD Molecular Property Diagnostic Suite (MPDS)

Molecular Property Diagnostic Suite (MPDS)

PhenoMeNal

PhenoMeNal

The Galaxy Project is supported in part by NHGRI, NSF, The Huck Institutes of the Life

PopGenIE / PlantGenIE

PopGenIE

RepeatExplorer

RepeatExplorer

RiboGalaxy

RiboGalaxy

RNA-Rocket @ Pathogen Portal

RNA-Rocket @ Pathogen Portal

RNA-Seq Portal

RNA-Seq Portal - Analyzing RNA-seq Data for Agricultural Animal Species

Stem Cell Discovery Engine

Stem Cell Discovery Engine (SCDE)

South Green

South Green

VectorBase Galaxy

VectorBase Galaxy

VirAmp

VirAmp

Whale Shark

Whale Shark Galaxy @ The Georgia Aquarium

Workflow4Metabolomics

Workflow4metabolomics Galaxy server

Workflow4Metabolomics Sponsors
Sponsors

Tool Publishing Servers

Tool publishing servers expose one or a few tools so that researchers can use the tools without having to install them locally or use command line.

The distinction between domain servers and tool publishing servers is fuzzy. In general, tool publishing servers expose tools from a particular organization, while domain servers include tools / datasets from other organizations and have a larger goal in mind.

ABiMS Tools

ABiMS Tools Galaxy Server

AB-OpenLab

FingeRprinting Ontology of Genomic variations (FROG)

AGEseq @ AspenDB

AGEseq Galaxy @ AspenDB

APOSTL

Automated Processing of SAINT Templated Layouts

ARGs-OAP

Structured ARG reference database Online Analysis Platform

BioCiphers Lab Galaxy

BioCiphers Galaxy

BioMaS

BioMaS Galaxy

BISTRO

BISTRO Galaxy

BitLAB

BitLAB Galaxy

Chemical Annotation Retrieval Toolkit (CART)

Chemical Annotation Retrieval Toolkit (CART) Galaxy

CTMM-TraIT Demo Galaxy

CTMM-TraIT Demo Galaxy


deepTools2

deepTools Galaxy Server


EpiToolKit

EpiToolKit Galaxy Server

Halogen Bonding

Halogen Bonding Webserver

Huttenhower Lab

Huttenhower Lab

IBERS @ Aberystwyth

IBERS @ Aberystwyth Galaxy

In Silico Galaxy

In Silico Galaxy

Koslicki Lab

Koslicki Lab Server

kmer-SVM

kmer-SVM

LiSIs

LiSIs

Majewski Lab

Majewski Lab: ExomeAI

Martin Luther U. Halle-Wittenberg

Martin Luther University Halle-Wittenberg

MBAC Metabiome Portal

MBAC Metabiome Portal

MGEScan

MGEScan on Galaxy Workflow System

MiModD NacreousMap

Baumeister Lab Galaxy featuring MiModD

MPI-HLR Bioinformatics Server

MPI-HLR Bioinformatics Server

NGS-QC

Gronemeyer Lab Galaxy and NGS-QC Generator

ODoSE

ODoSE: Ortholog Direction of Selection Engine

Osiris

Osiris

Palfinder

Galaxy Palfinder Service

PIA

PIA

PredPharmTox

PredPharmTox

PreSTIGE

PreSTIGE

QBRC Galaxy and PIPE-CLIP

QBRC Galaxy

RDF2Graph

RDF2Graph using Reactome

SIFTED

SIFTED

SymD

SymD

VarCap

VarCap

Vinther Lab

Vinther Lab: User-Friendly Tools for Sequencing-Based RNA Structure Probing Data

Wageningen UR

Wageningen UR Galaxy

ZBIT Bioinformatics Toolbox

ZBIT Bioinformatics Toolbox

Public ToolSheds

Galaxy Main Tool Shed

Sits at http://toolshed.g2.bx.psu.edu/, is supported by the Galaxy Team, and is the main Tool Shed of choice.

Galaxy Test ToolShed

Test Tool Shed is made for breaking. If you have some tools you want to try out first before making them public in the Main Tool Shed this is the place to go. Test Tool Shed is at http://testtoolshed.g2.bx.psu.edu/.

Galaxy@PRABI Tool Shed

Galaxy@PRABI

Tool Shed backing the Galaxy@PRABI server. DEfines bioinformatics tools developed by the research teams working in the perimeter of the PRABI core facility, including kissplice/kissDE, TETools, SexDetector, and priam.

DTL ToolShed

DTL ToolShed

The Dutch Techcentre for Life Sciences (DTL) has made its Galaxy ToolShed publicly available. The DTL ToolShed has almost 70 tools in it, from ANNOVAR to VCF-2-VariantList. This ToolShed was originally started at NBIC.

GUGGO ToolShed

The GUGGO public ToolShed contains over 160 valid tools in 132 repositories in 16 categories. GUGGO Tool Shed is at http://toolshed.genouest.org/.

If you have or know of a public server that is not listed here please add it, or send its information to Galaxy Outreach.

last edited 2016-11-08 22:03:08 by DaveClements