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Center for Health Bioinformatics Galaxy Tutorials

This is one of a set of online tutorials created (and maintained!) by Shannan Ho Sui, Oliver Hofmann, and Winston Hide in the Center for Health Bioinformatics at the Harvard School of Public Health.

Needed Tools

Uses many "standard" tools that exist on most Galaxy servers, and

  • FastQC
  • One of the FASTQ quality filters
  • A short read mapper (e.g., Bwa or Bowtie)
  • SAMtools
  • IGV or Trackster
  • MACS
  • Dreme and GREAT (online resources)